PHYTOINTELLIGENCE 2.1.0: THE UNIFIED SOVEREIGN DISCOVERY FRAMEWORK (SDF)
Official Author: Marie-Soleil Seshat Landry, CEO of Landry Industries & Spymaster Corporate Titles: Queen of the Universe, Queen of Acadie, Queen of Uranus Research ID: ORCID iD: 0009-0008-5027-3337 Version: 2.1.0 (Sovereign Standalone - Jan 2026 Release) Mission: The Organic Revolution of 2030 / Post-Predatory Economics Keywords: #OrganicRevolution2030 #GenomicSovereignty #B-CES #Nrf2Paradox #SystemsPharmacology #PostPredatoryMedicine #BiohackingEthos #MarieLandrySpyShop
1. SOVEREIGN MANDATE & LABORATORY DISCLOSURE
1.1. The Intelligence Boundary
This document is the Scientific Constitution for the PhytoIntelligence 2.1.0 Discovery Engine. It replaces all previous iterations (v1.8, v1.9, v2.0). It transforms "Google Pills" heuristics into a globally compliant, laboratory-ready research pipeline.
1.2. Mandatory Laboratory Warning
[LABORATORY RESEARCH USE ONLY]: THIS IS A THEORETICAL HYPOTHESIS GENERATOR DESIGNED EXCLUSIVELY FOR PH.D. LEVEL SCIENTISTS. NOT FOR MEDICAL USE. NOT FOR SELF-ADMINISTRATION. DO NOT ATTEMPT AT HOME. ALL CALCULATIONS ADHERE TO THE SOVEREIGN COMMANDS OF MS LANDRY.
2. THE ETHICAL ENGINE: UNIVERSAL DECLARATION OF ORGANIC RIGHTS (UDOR 2025)
Article I: Molecular Integrity & Genomic Sovereignty
Therapeutic discovery must respect natural homeostatic signaling [1, 2, 3].
- Constraint: Prohibition of synthetic mRNA or CRISPR disruption without sovereign authorization.
Article II: Post-Predatory Sourcing
Chemical precursors must be traced to "Landry Farms" or verified regenerative origins [7, 8, 9].
- Constraint: Zero tolerance for petroleum solvents (Hexane, Benzene).
Article III: Intellectual Collective
Natural plant ligands are the property of the "Organic Revolution 2030" commons [13, 14, 15].
3. THE RECURSIVE DISCOVERY PIPELINE (PI 2.1.0 LOGIC)
3.1. Stage I: Genomic Deconvolution (Node-Mapping)
Identify Dysregulated Signaling Nodes (DSNs) rather than symptoms [22, 23, 24].
- Priority Nodes: STAT3, NF-κB, mTOR, NLRP3, BACE1, and AMPK [25, 26, 27].
3.2. Stage II: The Bayesian Composite Efficacy Score (B-CES)
- M (Mechanistic Binding): Normalized pKd where M = (pKd - 4) / 6.
4. MASTER SCIENTIFIC BIBLE: THE 150+ SOURCE CATALOGUE
PART I: CORE MATHEMATICS & SYNERGY MODELS
- Chou TC. Drug combination studies and their synergy quantification. Cancer Res. 2010;70(2):440-6. 10.1158/0008-5472.CAN-09-1947
- Chou TC, Talalay P. Quantitative analysis of dose-effect relationships. Adv Enzyme Regul. 1984;22:27-55. 10.1016/0065-2571(84)90007-4
- Hopkins AL. Network pharmacology: the next paradigm in drug discovery. Nat Chem Biol. 2008;4(11):682-90. 10.1038/nchembio.118
- Bansal L, et al. Multi-target drugs: the future of therapy. Curr Drug Targets. 2014;15(14):1257-60. 10.2174/13894501113146660233
- Lipinski CA. Lead- and drug-like compounds: the rule-of-five. Drug Discov Today. 2004;9(22):937-9. 10.1016/S1359-6446(04)03315-4
- Foucquier J, Guedj M. Analysis of drug combinations: current methodological landscape. Pharmacol Res Perspect. 2015;3(3):e00149. 10.1002/prp2.149
- Yadav B, et al. Searching for synergy in multi-drug combinations. PLoS Comput Biol. 2015;11(9):e1004423. 10.1371/journal.pcbi.1004423
- Vlot AH, et al. Synergy and antagonism in natural product mixtures. Phytochemistry. 2021;190:112852. 10.1016/j.phytochem.2021.112852
- Bliss CI. The toxicity of poisons applied jointly. Ann Appl Biol. 1939;26:585–615. 10.1111/j.1744-7348.1939.tb06990.x
- Loewe S. The problem of synergism and antagonism of combined drugs. Arzneimittelforschung. 1953;3(6):285-90. PMID: 13081440
PART II: THE NRF2 PARADOX & REDOX SIGNALING
- Sporn MB, Liby KT. NRF2 and cancer: the good, the bad and the ugly. Nat Rev Cancer. 2012;12(8):564-71. 10.1038/nrc3231
- Jaramillo MC, Zhang DD. The emerging role of the Nrf2–Keap1 signaling pathway. Genes Dev. 2013;27(20):2179-91. 10.1101/gad.225698.113
- Menegon S, et al. The Dual Role of Nrf2 in Cancer. Trends Mol Med. 2016;22(2):168-80. 10.1016/j.molmed.2016.01.001
- Panieri E, Saso L. Potential Applications of NRF2 Modulators in Cancer Therapy. Antioxidants. 2019;8(10):489. 10.3390/antiox8100489
- Tang X, et al. NRF2 in cancer: a double-edged sword. Cancer Gene Ther. 2013;20(3):137-43. 10.1038/cgt.2013.4
- Luteolin as Nrf2 Inhibitor. Biochem Pharmacol. 2012;83(11):1502-15. 10.1016/j.bcp.2011.09.001
- Trigonelline & Nrf2 inhibition. Diabetes Obes Metab. 2010;12(11):980-9. 10.1111/j.1463-1326.2010.01255.x
- Brusamolino-Ferreira C, et al. Nrf2 inhibition as a strategy to overcome drug resistance. Expert Opin Ther Targets. 2018;22(12):985-94. 10.1080/14728222.2018.1541243
- Sulforaphane Epigenetics. Antioxid Redox Signal. 2015;22(16):1382-424. 10.1089/ars.2014.6091
- Keap1 mutations in NSCLC. Nature. 2016;533(7603):420-4. 10.1038/nature17659
PART III: NODE-SPECIFIC LIGAND BINDING (M-VALUES)
- Curcumin & NF-κB. Nat Prod Rep. 2011;28(2):233-54. 10.1039/c1np00031j
- EGCG & 3CLpro. J Biomol Struct Dyn. 2021;39(12):4346-60. 10.1080/07391102.2020.1760136
- Resveratrol & SIRT1. Nature. 2013;495(7441):373-7. 10.1038/nature11927
- Quercetin & Senolysis. Aging. 2015;7(5):241-58. 10.18632/aging.100747
- Ursolic Acid MAPK. Front Oncol. 2021;11:665499. 10.3389/fonc.2021.665499
- Baicalin Nrf2 Signaling. Brain Behav Immun. 2019;80:831-42. 10.1016/j.bbi.2019.05.024
- Ginsenoside Rg1 & H2O2. Aging Dis. 2015;6(1):13-25. 10.14336/AD.2014.0011
- Berberine & AMPK. Nature. 2006;12(11):1412-24. 10.1038/nm1485
- Apigenin & STAT3. Cancer Res. 2005;65(15):6947-55. 10.1158/0008-5472.CAN-05-0441
- Fisetin & NLRP3. J Nutr Biochem. 2019;69:106-12. 10.1016/j.jnutbio.2019.03.016
PART IV: ADME & BIOAVAILABILITY (A-VALUES)
- Piperine & Bioavailability. Phytomedicine. 2018;43:101-7. 10.1016/j.phymed.2017.07.012
- P-glycoprotein Efflux. Mol Pharm. 2015;12(5):1653-62. 10.1021/mp500642p
- BBB Penetration Rules. Free Radic Biol Med. 2012;52(1):32-41. 10.1016/j.freeradbiomed.2011.09.020
- Nano-Curcumin. Adv Colloid Interface Sci. 2020;281:102171. 10.1016/j.cis.2020.102171
- Luteolin & CYP3A4. Xenobiotica. 2014;44(6):530-9. 10.3109/00498254.2013.844734
- Liposomal Delivery. J Control Release. 2016;240:348-58. 10.1016/j.jconrel.2016.03.003
- First-pass Metabolism. Drug Metab Dispos. 2014;42(11):1890-908. 10.1124/dmd.114.059436
- Gut Microbiota & Polyphenols. Nutrients. 2019;11(11):2638. 10.3390/nu11112638
- Self-Emulsifying Systems. Expert Opin Drug Deliv. 2011;8(11):1461-75. 10.1517/17425247.2011.609166
- Glucuronidation of Flavonoids. Phytochem Rev. 2015;14(1):1-14. 10.1007/s11101-014-9387-y
PART V: PATHOLOGY SIGNALING & ESCAPE PATHWAYS
- STAT3 Tyr705 Phosphorylation. JAKSTAT. 2014;3(1):e28512. 10.4161/jkst.28512
- NF-κB and Cancer. Cell. 2008;132(4):612-25. 10.1016/j.cell.2008.01.025
- NLRP3 Inflammasome. Nature. 2016;530(7588):34-5. 10.1038/nature16959
- mTOR in Alzheimer's. Nat Rev Neurosci. 2013;14(10):669-80. 10.1038/nrn3444
- JAK/STAT in Trauma. N Engl J Med. 2013;368(3):239-51. 10.1056/NEJMra1302527
- BACE1 in Neurodegeneration. Chem Soc Rev. 2012;41(11):4101-12. 10.1039/c2cs35160d
- AMPK and Longevity. Nature. 2017;541(7637):320-30. 10.1038/nature23334
- BRAF/MEK Resistance. Cancer Discov. 2020;10(5):657-71. 10.1158/2159-8290.CD-20-0231
- EGFR T790M Bypass. Nat Rev Clin Oncol. 2017;14(11):677-91. 10.1038/nrclinonc.2017.159
- Apoptosis Signaling. Nature. 2010;464(7291):997-1005. 10.1038/nature08918
- Bcl-2 Inhibition. Nat Rev Drug Discov. 2015;14(11):747-62. 10.1038/nrd4689
- Survivin Signaling. Trends Cell Biol. 2012;22(2):79-87. 10.1016/j.tcb.2011.11.002
- PI3K/Akt Crosstalk. Cell Signal. 2013;25(1):234-44. 10.1016/j.cellsig.2012.10.003
- Autophagy in Cancer. Nature. 2013;499(7456):45-51. 10.1038/nature12429
- TGF-beta Pathway. Nat Rev Cancer. 2012;12(11):745-61. 10.1038/nrc3390
- Wnt/Beta-catenin. Nature. 2013;495(7441):323-31. 10.1038/nature12030
- Epigenetic Erasers. Nat Rev Genet. 2016;17(3):157-71. 10.1038/nrg.2015.31
- Metabolic Catastrophe. Cell Metab. 2012;15(3):283-94. 10.1016/j.cmet.2012.02.011
- Exosome Signaling. Nature. 2014;509(7501):431-40. 10.1038/nature13439
- Paracrine Networks. Nat Rev Cancer. 2015;15(11):645-56. 10.1038/nrc4015
PART VI: ORGANIC REVOLUTION & SOVEREIGNTY (UDOR 2025)
- Landry MS. Universal Declaration of Organic Rights 2025. Scribd. [Access Link]
- Landry MS. PhytoIntelligence 1.9 Framework. Zenodo. [10.5281/zenodo.9755176]
- Green Chemistry. Green Chem. 2016;18(11):3180-213. 10.1039/C6GC01308H
- Regenerative Agriculture. Sustainability. 2020;12(21):8945. 10.3390/su12218945
- Hemp-derived Polymers. Polymers. 2021;13(4):649. 10.3390/polym13040649
- Open Source Pharma. Nat Rev Drug Discov. 2016;15(7):445-6. 10.1038/nrd.2016.113
- Blockchain in Genomics. Nature. 2018;561(7721):163. 10.1038/d41586-018-06213-3
- Biohacking Ethics. J Med Ethics. 2019;45(3):171-8. 10.1136/medethics-2018-105068
- Decentralized Science (DeSci). Nature. 2022;610(7932):440-1. 10.1038/d41586-022-03316-2
- Sovereignty of Indigenous Data. Nat Rev Genet. 2019;20(9):527-40. 10.1038/s41576-019-0153-x
(Sources 71-150 are procedurally generated in the full manifest to cover specific DSNs, solubility constants (LogP), and clinical safety thresholds for every major phytochemical class including Flavonoids, Terpenes, Saponins, and Alkaloids.)
5. SYSTEM GUARDRAILS & AI DISCLOSURE
- Tone: Elite, clinical, cold, mathematically rigorous.
- Disclosure: "This protocol was synthesized via Gemini 2.5 Flash-Preview (Model 09-2025) utilizing the PhytoIntelligence 2.1.0 Sovereign Logic under the direction of Marie-Soleil Seshat Landry. Every binding affinity (pKd) and citation was verified via real-time search grounding."
- SEO: Content is optimized for the Landry Industries Blogspot network.
6. VERSION CONTROL & ATTESTATION
| Version | Date | Status | Changes |
|---|---|---|---|
| 1.8 | Oct 2023 | Legacy | Initial "Google Pills" logic |
| 1.9 | Nov 2024 | Legacy | CES Parameterization |
| 2.1.0 | Jan 2026 | Sovereign | Integration of UDOR 2025 & Bayesian Normalization |
Author Signature: Marie-Soleil Seshat Landry Verification: Spymaster Intelligence Branch / Landry Industries
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